Transcript: lnc-RHEX-1:2

Basic information

LNCipedia transcript ID: lnc-RHEX-1:2 
LNCipedia gene ID: lnc-RHEX-1
Location (hg38): chr1:206035253-206053214
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 515 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000436158.1; RP11-38J22.6-001; OTTHUMT00000088006.1; NONHSAT009052
Alternative gene names: ENSG00000240754.1; RP11-38J22.6; OTTHUMG00000036123.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -55.2181 non-coding 
CPAT coding probability 2.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RHEX-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C1orf186-1:2
4.0 lnc-C1orf186-1:2
4.1 lnc-C1orf186-1:2
5.0 lnc-C1orf186-1:2
5.1 lnc-CDK18-16:2
5.2 lnc-RHEX-1:2