Transcript: lnc-RHOBTB3-1:3

Basic information

LNCipedia transcript ID: lnc-RHOBTB3-1:3 
LNCipedia gene ID: lnc-RHOBTB3-1
Location (hg38): chr5:95844048-95848125
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 657 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00010747; NONHSAT102866
Alternative gene names: XLOC_004478; linc-CAST-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -232.3126 non-coding 
CPAT coding probability 0.60% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RHOBTB3-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C5orf27-1:1
3.1 lnc-C5orf27-1:1
4.0 lnc-C5orf27-1:1
4.1 lnc-C5orf27-1:1
5.0 lnc-C5orf27-1:1
5.1 lnc-GPR150-11:1
5.2 lnc-RHOBTB3-1:3