Transcript: lnc-RHOG-2:1

Basic information

LNCipedia transcript ID: lnc-RHOG-2:1 
LNCipedia gene ID: lnc-RHOG-2
Ensembl Gene ID: ENSG00000228661
Ensembl Transcript ID: ENST00000415809
Location (hg38): chr11:3854318-3855509
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 494 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00019165; ENST00000415809.1; AC090587.5-001; OTTHUMT00000034123.1; NONHSAT017627
Alternative gene names: XLOC_009363; linc-RHOG; ENSG00000228661.1; AC090587.5; OTTHUMG00000012285.1; AC090587.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -433.2634 non-coding 
CPAT coding probability 9.11% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RHOG-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RHOG-2:1
3.1 lnc-RHOG-2:1
4.0 lnc-RHOG-2:1
4.1 lnc-RHOG-2:1
5.0 lnc-RHOG-2:1
5.1 lnc-OR52A1-20:4
5.2 lnc-RHOG-2:1