Transcript: lnc-RHOT1-1:2

Basic information

LNCipedia transcript ID: lnc-RHOT1-1:2 
LNCipedia gene ID: lnc-RHOT1-1
Ensembl Gene ID: ENSG00000277511
Ensembl Transcript ID: ENST00000613639
Location (hg38): chr17:32127595-32128454
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 860 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000613639.1
Alternative gene names: ENSG00000277511.1; CTD-2095E4.5; AC116407.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 23.7087 non-coding 
CPAT coding probability 12.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RHOT1-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-RHOT1-1:2
4.1 lnc-RHOT1-1:2
5.0 lnc-RHOT1-1:2
5.1 lnc-NSRP1-64:2
5.2 lnc-RHOT1-1:2