Transcript: lnc-RHOV-3:1

Basic information

LNCipedia transcript ID: lnc-RHOV-3:1 
LNCipedia gene ID: lnc-RHOV-3
Ensembl Gene ID: ENSG00000280036
Ensembl Transcript ID: ENST00000624853
Location (hg38): chr15:41016990-41018843
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1854 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000624853.1
Alternative gene names: ENSG00000280036.1; RP11-540O11.8; AC020661.5; AC020661.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -164.1828 non-coding 
CPAT coding probability 5.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RHOV-3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-RHOV-3:1
4.1 lnc-RHOV-3:1
5.0 lnc-RHOV-3:1
5.1 lnc-VPS39-26:1
5.2 lnc-RHOV-3:1