Transcript: lnc-RHOXF1-3:4

Basic information

LNCipedia transcript ID: lnc-RHOXF1-3:4 
LNCipedia gene ID: lnc-RHOXF1-3
Location (hg38): chrX:120178488-120245267
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 573 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000554109; ENST00000554109.1; NKAPP1-003; OTTHUMT00000411975.1; NONHSAT138369
Alternative gene names: ENSG00000233382; NKAPP1; ENSG00000233382.4; OTTHUMG00000022295.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -216.133 non-coding 
CPAT coding probability 69.24% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-RHOXF1-3:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM70A-1:3
3.1 lnc-FAM70A-1:1
4.0 lnc-RHOXF1-3:4
4.1 lnc-RHOXF1-3:4
5.0 lnc-RHOXF1-3:4
5.1 lnc-CT47A8-10:4
5.2 lnc-RHOXF1-3:4