Transcript: lnc-RHOXF1-3:5

Basic information

LNCipedia transcript ID: lnc-RHOXF1-3:5 
LNCipedia gene ID: lnc-RHOXF1-3
Location (hg38): chrX:120224413-120245233
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 631 bp
Exons: 3
Sources: Broad Institute
Alternative transcript names: TCONS_00017366
Alternative gene names: XLOC_008225; linc-RHOXF1-4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -216.133 non-coding 
CPAT coding probability 57.90% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-RHOXF1-3:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM70A-1:4
3.1 lnc-FAM70A-1:5
4.0 lnc-RHOXF1-3:5
4.1 lnc-RHOXF1-3:5
5.0 lnc-RHOXF1-3:5
5.1 lnc-CT47A8-10:5
5.2 lnc-RHOXF1-3:5