Transcript: lnc-RICTOR-54:16

Basic information

LNCipedia transcript ID: lnc-RICTOR-54:16 
HGNC Gene Symbol: lnc-RICTOR-54    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1265
Ensembl Gene ID: ENSG00000249740
Ensembl Transcript ID: ENST00000506463
RefSeq ID: NR_104631
Location (hg38): chr5:38710367-38720273
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 800 bp
Exons: 5
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00009644; ENST00000506463; ENST00000506463.1; RP11-122C5.1-001; OTTHUMT00000366995.1; NONHSAT101103; NR_104631; NR_104631.1
Alternative gene names: XLOC_004794; linc-LIFR-2; ENSG00000249911; RP11-122C5.1; ENSG00000249911.1; OTTHUMG00000162038.1; LINC01265; ; ENSG00000249740.2; OSMR-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -166.7733 non-coding 
CPAT coding probability 9.11% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RICTOR-54:16 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AC091435.1-2:1
3.1 lnc-AC091435.1-2:1
4.0 LINC01265:1
4.1 LINC01265:1
5.0 LINC01265:1
5.1 lnc-SELENOP-54:16
5.2 lnc-RICTOR-54:16