Transcript: lnc-RIIAD1-3:1

Basic information

LNCipedia transcript ID: lnc-RIIAD1-3:1 
LNCipedia gene ID: lnc-RIIAD1-3
Ensembl Gene ID: ENSG00000232937
Ensembl Transcript ID: ENST00000420382
Location (hg38): chr1:151765709-151766389
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 424 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000420382.1; RP11-98D18.2-001; OTTHUMT00000105377.1; NONHSAT006426
Alternative gene names: ENSG00000232937.1; RP11-98D18.2; OTTHUMG00000045373.1; AL589765.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -156.1825 non-coding 
CPAT coding probability 0.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RIIAD1-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RIIAD1-1:1
4.0 lnc-RIIAD1-3:1
4.1 lnc-RIIAD1-3:1
5.0 lnc-RIIAD1-3:1
5.1 lnc-PSMD4-18:1
5.2 lnc-RIIAD1-3:1