Transcript: lnc-RIMBP2-6:1

Basic information

LNCipedia transcript ID: lnc-RIMBP2-6:1 
LNCipedia gene ID: lnc-RIMBP2-6
Ensembl Gene ID: ENSG00000256137
Ensembl Transcript ID: ENST00000544036
Location (hg38): chr12:129681427-129698227
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 392 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000544036; ENST00000544036.1; RP11-174M13.2-001; OTTHUMT00000399603.1; NONHSAT031937
Alternative gene names: ENSG00000256137; RP11-174M13.2; ENSG00000256137.1; OTTHUMG00000168405.1; AC117373.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -68.2023 non-coding 
CPAT coding probability 2.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RIMBP2-6:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RIMBP2-6:1
3.1 lnc-RIMBP2-6:1
4.0 lnc-RIMBP2-6:1
4.1 lnc-RIMBP2-6:1
5.0 lnc-RIMBP2-6:1
5.1 lnc-RIMBP2-21:1
5.2 lnc-RIMBP2-6:1