Transcript: lnc-RIMS3-3:1

Basic information

LNCipedia transcript ID: lnc-RIMS3-3:1 
LNCipedia gene ID: lnc-RIMS3-3
Ensembl Gene ID: ENSG00000227278
Ensembl Transcript ID: ENST00000453437
Location (hg38): chr1:40514461-40515057
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 432 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000453437.1; RP11-656D10.5-001; OTTHUMT00000019096.1; NONHSAT002646
Alternative gene names: ENSG00000227278.1; RP11-656D10.5; OTTHUMG00000007306.1; AL603839.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -80.483 non-coding 
CPAT coding probability 1.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RIMS3-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RIMS3-3:1
4.0 lnc-RIMS3-3:1
4.1 lnc-RIMS3-3:1
5.0 lnc-RIMS3-3:1
5.1 lnc-BMP8B-17:1
5.2 lnc-RIMS3-3:1