Transcript: lnc-RIMS3-5:1

Basic information

LNCipedia transcript ID: lnc-RIMS3-5:1 
LNCipedia gene ID: lnc-RIMS3-5
Location (hg38): chr1:40466740-40472476
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2382 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Broad Institute; NONCODE v4
Alternative transcript names: ENST00000515449; TCONS_00000506; NONHSAT002641
Alternative gene names: ENSG00000250648; XLOC_000796; linc-COL9A2-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 15.3224 non-coding 
CPAT coding probability 3.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RIMS3-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RIMS3-2:1
3.1 lnc-RIMS3-5:1
4.0 lnc-RIMS3-5:1
4.1 lnc-RIMS3-5:1
5.0 lnc-RIMS3-5:1
5.1 lnc-BMP8B-14:1
5.2 lnc-RIMS3-5:1