Transcript: lnc-RIPOR1-1:10

Basic information

LNCipedia transcript ID: lnc-RIPOR1-1:10 
LNCipedia gene ID: lnc-RIPOR1-1
Ensembl Gene ID: ENSG00000270049
Ensembl Transcript ID: ENST00000635000
Location (hg38): chr16:67481407-67505063
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1462 bp
Exons: 4
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000635000.1
Alternative gene names: ENSG00000270049.2; RP11-297D21.4; AC009061.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 15.2495 non-coding 
CPAT coding probability 0.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RIPOR1-1:10 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-FAM65A-1:6
4.1 lnc-FAM65A-1:6
5.0 lnc-FAM65A-1:6
5.1 lnc-NOL3-29:10
5.2 lnc-RIPOR1-1:10