Transcript: lnc-RIPOR1-1:13

Basic information

LNCipedia transcript ID: lnc-RIPOR1-1:13 
LNCipedia gene ID: lnc-RIPOR1-1
Location (hg38): chr16:67492098-67506500
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2105 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00024442; NONHSAT143132
Alternative gene names: XLOC_011763; linc-AGRP-AS


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 15.2495 non-coding 
CPAT coding probability 8.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RIPOR1-1:13 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM65A-1:2
3.1 lnc-FAM65A-1:2
4.0 lnc-FAM65A-1:2
4.1 lnc-FAM65A-1:2
5.0 lnc-FAM65A-1:2
5.1 lnc-NOL3-29:13
5.2 lnc-RIPOR1-1:13