Transcript: lnc-RIPOR2-2:1

Basic information

LNCipedia transcript ID: lnc-RIPOR2-2:1 
LNCipedia gene ID: lnc-RIPOR2-2
Ensembl Gene ID: ENSG00000223623
Ensembl Transcript ID: ENST00000416595
Location (hg38): chr6:25053627-25057073
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 430 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00011469; ENST00000416595; ENST00000416595.1; RP3-425P12.1-001; OTTHUMT00000040031.1; NONHSAT108132
Alternative gene names: XLOC_005642; linc-FAM65B-2; ENSG00000223623; RP3-425P12.1; ENSG00000223623.1; OTTHUMG00000014379.1; AL133268.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -35.8915 non-coding 
CPAT coding probability 1.82% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RIPOR2-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM65B-2:1
3.1 lnc-FAM65B-2:1
4.0 lnc-FAM65B-2:1
4.1 lnc-FAM65B-2:1
5.0 lnc-FAM65B-2:1
5.1 lnc-C6orf62-14:1
5.2 lnc-RIPOR2-2:1