Transcript: lnc-RNASE3-1:1

Basic information

LNCipedia transcript ID: lnc-RNASE3-1:1 
LNCipedia gene ID: lnc-RNASE3-1
Location (hg38): chr14:20919341-20920176
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 605 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000258817; ENST00000258817.2; RP11-84C10.2-201; NONHSAT035616; NR_033909
Alternative gene names: ENSG00000136315; RP11-84C10.2; ENSG00000136315.3; OTTHUMG00000171041.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -2.7068 non-coding 
CPAT coding probability 30.69% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RNASE3-1:1 no no no no

Available literature

  1. Ding (2014), Expression and clinical significance of the long non-coding RNA PVT1 in human gastric cancer., Onco Targets Ther


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RNASE3-1:1
3.1 lnc-RNASE3-1:1
4.0 lnc-RNASE3-1:1
4.1 lnc-RNASE3-1:1
5.0 lnc-RNASE3-1:1
5.1 lnc-OR4K15-32:1
5.2 lnc-RNASE3-1:1