Transcript: lnc-RNF113B-3:1

Basic information

LNCipedia transcript ID: lnc-RNF113B-3:1 
LNCipedia gene ID: lnc-RNF113B-3
Ensembl Gene ID: ENSG00000226134
Ensembl Transcript ID: ENST00000437334
Location (hg38): chr13:97675011-97677963
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 692 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00021691; ENST00000437334; ENST00000437334.1; RP11-120E13.1-001; OTTHUMT00000045530.1; NONHSAT034837
Alternative gene names: XLOC_010703; linc-OXGR1-4; ENSG00000226134; RP11-120E13.1; ENSG00000226134.1; OTTHUMG00000017241.1; AL359502.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -127.0369 non-coding 
CPAT coding probability 4.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RNF113B-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RNF113B-3:1
3.1 lnc-RNF113B-3:1
4.0 lnc-RNF113B-3:1
4.1 lnc-RNF113B-3:1
5.0 lnc-RNF113B-3:1
5.1 lnc-IRS2-64:1
5.2 lnc-RNF113B-3:1