Transcript: lnc-RNF135-1:1

Basic information

LNCipedia transcript ID: lnc-RNF135-1:1 
LNCipedia gene ID: lnc-RNF135-1
Location (hg38): chr17:31024185-31032567
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 367 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; NONCODE v4
Alternative transcript names: ENST00000504550; NONHSAT052853
Alternative gene names: ENSG00000250288; AC138207.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -26.8614 non-coding 
CPAT coding probability 0.11% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RNF135-1:1 no no no no

Available literature

  1. Li (2015), Construction and analysis of lncRNA-lncRNA synergistic networks to reveal clinically relevant lncRNAs in cancer., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RNF135-1:1
3.1 lnc-RNF135-1:1
4.0 lnc-RNF135-1:1
4.1 lnc-RNF135-1:1
5.0 lnc-RNF135-1:1
5.1 lnc-NSRP1-30:35
5.2 lnc-RNF135-1:1