Transcript: lnc-RNF135-1:15

Basic information

LNCipedia transcript ID: lnc-RNF135-1:15 
LNCipedia gene ID: lnc-RNF135-1
Location (hg38): chr17:31024185-31031583
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 266 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT052854
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -41.3746 non-coding 
CPAT coding probability 0.81% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RNF135-1:15 no no no no

Available literature

  1. Li (2015), Construction and analysis of lncRNA-lncRNA synergistic networks to reveal clinically relevant lncRNAs in cancer., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RNF135-1:15
4.0 lnc-RNF135-1:15
4.1 lnc-RNF135-1:15
5.0 lnc-RNF135-1:15
5.1 lnc-NSRP1-30:36
5.2 lnc-RNF135-1:15