Transcript: lnc-RNF135-1:17

Basic information

LNCipedia transcript ID: lnc-RNF135-1:17 
LNCipedia gene ID: lnc-RNF135-1
Location (hg38): chr17:31045407-31093127
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 637 bp
Exons: 4
Sources: NONCODE v4
Alternative transcript names: NONHSAT052859
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -113.6271 non-coding 
CPAT coding probability 1.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RNF135-1:17 no no no no

Available literature

  1. Li (2015), Construction and analysis of lncRNA-lncRNA synergistic networks to reveal clinically relevant lncRNAs in cancer., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RNF135-1:17
4.0 lnc-RNF135-1:17
4.1 lnc-RNF135-1:17
5.0 lnc-RNF135-1:17
5.1 lnc-NSRP1-30:38
5.2 lnc-RNF135-1:17