Transcript: lnc-RNF135-1:18

Basic information

LNCipedia transcript ID: lnc-RNF135-1:18 
LNCipedia gene ID: lnc-RNF135-1
Location (hg38): chr17:31091898-31093258
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1361 bp
Exons: 1
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT052861; FPKM1_group_12584_transcript_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -81.8035 non-coding 
CPAT coding probability 5.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RNF135-1:18 no no no no

Available literature

  1. Li (2015), Construction and analysis of lncRNA-lncRNA synergistic networks to reveal clinically relevant lncRNAs in cancer., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RNF135-1:18
4.0 lnc-RNF135-1:18
4.1 lnc-RNF135-1:18
5.0 lnc-RNF135-1:18
5.1 lnc-NSRP1-30:39
5.2 lnc-RNF135-1:18