Transcript: lnc-RNF135-1:26

Basic information

LNCipedia transcript ID: lnc-RNF135-1:26 
LNCipedia gene ID: lnc-RNF135-1
Ensembl Gene ID: ENSG00000214719
Ensembl Transcript ID: ENST00000440026
Location (hg38): chr17:30607658-30635466
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1961 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000440026.1; LRRC37BP1-002; OTTHUMT00000256202.1
Alternative gene names: ENSG00000214719.5; LRRC37BP1; OTTHUMG00000132793.2; ENSG00000214719.7; AC005562.1; ENSG00000214719.11


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -13.1716 non-coding 
CPAT coding probability 71.68% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-RNF135-1:26 no no no no

Available literature

  1. Li (2015), Construction and analysis of lncRNA-lncRNA synergistic networks to reveal clinically relevant lncRNAs in cancer., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TBC1D29-1:5
4.0 lnc-RNF135-1:26
4.1 lnc-RNF135-1:26
5.0 lnc-RNF135-1:26
5.1 lnc-NSRP1-30:26
5.2 lnc-RNF135-1:26