Transcript: lnc-RNF135-1:31

Basic information

LNCipedia transcript ID: lnc-RNF135-1:31 
LNCipedia gene ID: lnc-RNF135-1
Location (hg38): chr17:30576465-30634323
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1454 bp
Exons: 9
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000214719.7|ENST00000398849.2
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 123.9245 coding 
CPAT coding probability 54.92% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-RNF135-1:31 no no no no

Available literature

  1. Li (2015), Construction and analysis of lncRNA-lncRNA synergistic networks to reveal clinically relevant lncRNAs in cancer., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-RNF135-1:31
5.0 lnc-RNF135-1:31
5.1 lnc-NSRP1-30:4
5.2 lnc-RNF135-1:31