Transcript: lnc-RNF135-1:37

Basic information

LNCipedia transcript ID: lnc-RNF135-1:37 
LNCipedia gene ID: lnc-RNF135-1
Location (hg38): chr17:30600414-30644920
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 9202 bp
Exons: 9
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000214719.7|HBMT00000595683.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 276.9419 coding 
CPAT coding probability 89.54% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-RNF135-1:37 no no no no

Available literature

  1. Li (2015), Construction and analysis of lncRNA-lncRNA synergistic networks to reveal clinically relevant lncRNAs in cancer., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-RNF135-1:37
5.0 lnc-RNF135-1:37
5.1 lnc-NSRP1-30:15
5.2 lnc-RNF135-1:37