Transcript: lnc-RNF135-1:6

Basic information

LNCipedia transcript ID: lnc-RNF135-1:6 
LNCipedia gene ID: lnc-RNF135-1
Location (hg38): chr17:30600375-30633491
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1547 bp
Exons: 7
Sources: NONCODE v4
Alternative transcript names: NONHSAT052794
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 366.8993 coding 
CPAT coding probability 97.86% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-RNF135-1:6 no no no no

Available literature

  1. Li (2015), Construction and analysis of lncRNA-lncRNA synergistic networks to reveal clinically relevant lncRNAs in cancer., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RNF135-1:6
4.0 lnc-RNF135-1:6
4.1 lnc-RNF135-1:6
5.0 lnc-RNF135-1:6
5.1 lnc-NSRP1-30:14
5.2 lnc-RNF135-1:6