Transcript: lnc-RNF135-1:7

Basic information

LNCipedia transcript ID: lnc-RNF135-1:7 
LNCipedia gene ID: lnc-RNF135-1
Location (hg38): chr17:30600437-30634200
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1671 bp
Exons: 9
Sources: NONCODE v4
Alternative transcript names: NONHSAT052795
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 343.6421 coding 
CPAT coding probability 92.87% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-RNF135-1:7 no no no no

Available literature

  1. Li (2015), Construction and analysis of lncRNA-lncRNA synergistic networks to reveal clinically relevant lncRNAs in cancer., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RNF135-1:7
4.0 lnc-RNF135-1:7
4.1 lnc-RNF135-1:7
5.0 lnc-RNF135-1:7
5.1 lnc-NSRP1-30:20
5.2 lnc-RNF135-1:7