Transcript: lnc-RNF144A-2:8

Basic information

LNCipedia transcript ID: lnc-RNF144A-2:8 
LNCipedia gene ID: lnc-RNF144A-2
Ensembl Gene ID: ENSG00000229727
Ensembl Transcript ID: ENST00000435062
Location (hg38): chr2:7421265-7450254
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2253 bp
Exons: 7
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT068947; ENST00000435062.2; ENST00000435062.6
Alternative gene names: ENSG00000229727.2; AC013460.1; ENSG00000229727.6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -35.7305 non-coding 
CPAT coding probability 3.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RNF144A-2:8 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RNF144A-2:8
4.0 lnc-RNF144A-2:8
4.1 lnc-RNF144A-2:8
5.0 lnc-RNF144A-2:8
5.1 lnc-SNX17-238:5
5.2 lnc-RNF144A-2:8