Transcript: lnc-RNF152-2:3

Basic information

LNCipedia transcript ID: lnc-RNF152-2:3 
LNCipedia gene ID: lnc-RNF152-2
Ensembl Gene ID: ENSG00000267175
Ensembl Transcript ID: ENST00000590199
Location (hg38): chr18:61592375-61748754
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 523 bp
Exons: 4
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT059603; ENST00000590199.1; ENST00000590199.5
Alternative gene names: ENSG00000267175.1; RP11-879F14.1; ENSG00000267175.5; AC105094.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -126.1208 non-coding 
CPAT coding probability 16.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RNF152-2:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RNF152-3:5
4.0 lnc-RNF152-2:3
4.1 lnc-RNF152-2:3
5.0 lnc-RNF152-2:3
5.1 lnc-MBD2-63:3
5.2 lnc-RNF152-2:3