Transcript: lnc-RNF166-1:2

Basic information

LNCipedia transcript ID: lnc-RNF166-1:2 
LNCipedia gene ID: lnc-RNF166-1
Ensembl Gene ID: ENSG00000278341
Ensembl Transcript ID: ENST00000616106
Location (hg38): chr16:88708956-88710437
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1482 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000616106.1
Alternative gene names: ENSG00000278341.1; RP5-1142A6.10; AC138028.6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 4.2562 non-coding 
CPAT coding probability 17.83% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RNF166-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-RNF166-1:2
4.1 lnc-RNF166-1:2
5.0 lnc-RNF166-1:2
5.1 lnc-KLHDC4-32:2
5.2 lnc-RNF166-1:2