Transcript: lnc-RNF186-1:1

Basic information

LNCipedia transcript ID: lnc-RNF186-1:1 
LNCipedia gene ID: lnc-RNF186-1
Location (hg38): chr1:19684091-19690135
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 3081 bp
Exons: 3
Sources: Biogazelle lncRNA chip
Alternative transcript names: ENST00000512048
Alternative gene names: ENSG00000250744


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 1.3853 non-coding 
CPAT coding probability 24.91% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RNF186-1:1 no no no no

Available literature

  1. Malouf (2015), Characterization of long non-coding RNA transcriptome in clear-cell renal cell carcinoma by next-generation deep sequencing., Mol Oncol


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RNF186-1:1
3.1 lnc-RNF186-1:1
4.0 lnc-RNF186-1:1
4.1 lnc-RNF186-1:1
5.0 lnc-RNF186-1:1
5.1 lnc-CAMK2N1-13:1
5.2 lnc-RNF186-1:1