Transcript: lnc-RNF34-1:3

Basic information

LNCipedia transcript ID: lnc-RNF34-1:3 
LNCipedia gene ID: lnc-RNF34-1
Ensembl Gene ID: ENSG00000258435
Ensembl Transcript ID: ENST00000557474
Location (hg38): chr12:121391962-121399859
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 552 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000557474; ENST00000557474.1; RP11-711D18.2-001; OTTHUMT00000413886.1; NONHSAT031430
Alternative gene names: ENSG00000258435; RP11-711D18.2; ENSG00000258435.1; OTTHUMG00000171523.1; AC048337.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -83.02 non-coding 
CPAT coding probability 5.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RNF34-1:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RNF34-1:3
3.1 lnc-RNF34-1:3
4.0 lnc-RNF34-1:3
4.1 lnc-RNF34-1:3
5.0 lnc-RNF34-1:3
5.1 lnc-PSMD9-24:5
5.2 lnc-RNF34-1:3