Transcript: lnc-RNF39-13:2

Basic information

LNCipedia transcript ID: lnc-RNF39-13:2 
LNCipedia gene ID: lnc-RNF39-13
RefSeq ID: NR_001317
Location (hg38): chr6:29924592-29927215
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2624 bp
Exons: 1
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_001317; NR_001317.3
Alternative gene names: HCGIV-6; HCGIV.5; HCGIV-06; bCX67J3.3; Em:AB023056.16; bPG309N1.1; bQB90C11.3; HCG4B


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -36.4164 non-coding 
CPAT coding probability 96.26% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-RNF39-13:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RNF39-11:5
4.0 HCG4B:2
4.1 HCG4B:2
5.0 HCG4B:2
5.1 lnc-SFTA2-31:2
5.2 lnc-RNF39-13:2