Transcript: lnc-RNF39-13:3

Basic information

LNCipedia transcript ID: lnc-RNF39-13:3 
LNCipedia gene ID: lnc-RNF39-13
Location (hg38): chr6:29925983-29926973
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 991 bp
Exons: 1
Sources: NONCODE v4
Alternative transcript names: NONHSAT108564
Alternative gene names: HCGIV-6; HCGIV.5; HCGIV-06; bCX67J3.3; Em:AB023056.16; bPG309N1.1; bQB90C11.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -239.9362 non-coding 
CPAT coding probability 96.57% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-RNF39-13:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RNF39-11:3
4.0 HCG4B:3
4.1 HCG4B:3
5.0 HCG4B:3
5.1 lnc-SFTA2-31:3
5.2 lnc-RNF39-13:3