Transcript: lnc-RNF39-4:10

Basic information

LNCipedia transcript ID: lnc-RNF39-4:10 
LNCipedia gene ID: lnc-RNF39-4
Location (hg38): chr6:30012099-30035015
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 9771 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000444051; ENST00000444051.1; ZNRD1-AS1-008; OTTHUMT00000253085.1; NONHSAT108583
Alternative gene names: ENSG00000204623; ZNRD1-AS1; ENSG00000204623.4; OTTHUMG00000031109.3; ENSG00000204623.8


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 16.9517 non-coding 
CPAT coding probability 2.63% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RNF39-4:10 no no no no

Available literature

  1. Guo (2015), Expression quantitative trait loci in long non-coding RNA ZNRD1-AS1 influence cervical cancer development., Am J Cancer Res
  2. Wen (2015), Expression quantitative trait loci in long non-coding RNA ZNRD1-AS1 influence both HBV infection and hepatocellular carcinoma development., Mol. Carcinog.
  3. Yang (2015), Expression profile of long non-coding RNAs is altered in endometrial cancer., Int J Clin Exp Med
  4. Yin (2015), Expression Quantitative Trait Loci for CARD8 Contributes to Risk of Two Infection-Related Cancers--Hepatocellular Carcinoma and Cervical Cancer., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RNF39-1:10
3.1 lnc-RNF39-4:10
4.0 lnc-RNF39-4:10
4.1 lnc-RNF39-4:10
5.0 lnc-RNF39-4:10
5.1 lnc-SFTA2-30:34
5.2 lnc-RNF39-4:10