Transcript: lnc-RNF39-4:17

Basic information

LNCipedia transcript ID: lnc-RNF39-4:17 
LNCipedia gene ID: lnc-RNF39-4
RefSeq ID: NR_103542
Location (hg38): chr6:30012101-30013922
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1822 bp
Exons: 1
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT108584; NR_103542; NR_103542.1
Alternative gene names: HCG8


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 3.8762 non-coding 
CPAT coding probability 4.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RNF39-4:17 no no no no

Available literature

  1. Guo (2015), Expression quantitative trait loci in long non-coding RNA ZNRD1-AS1 influence cervical cancer development., Am J Cancer Res
  2. Wen (2015), Expression quantitative trait loci in long non-coding RNA ZNRD1-AS1 influence both HBV infection and hepatocellular carcinoma development., Mol. Carcinog.
  3. Yang (2015), Expression profile of long non-coding RNAs is altered in endometrial cancer., Int J Clin Exp Med
  4. Yin (2015), Expression Quantitative Trait Loci for CARD8 Contributes to Risk of Two Infection-Related Cancers--Hepatocellular Carcinoma and Cervical Cancer., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RNF39-4:17
4.0 lnc-RNF39-4:17
4.1 lnc-RNF39-4:17
5.0 lnc-RNF39-4:17
5.1 lnc-SFTA2-30:37
5.2 lnc-RNF39-4:17