Transcript: lnc-RNF39-4:3

Basic information

LNCipedia transcript ID: lnc-RNF39-4:3 
LNCipedia gene ID: lnc-RNF39-4
RefSeq ID: NR_026751
Location (hg38): chr6:30001011-30061184
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2430 bp
Exons: 6
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000420251; ENST00000420251.1; ZNRD1-AS1-004; OTTHUMT00000252967.2; NONHSAT108578; NR_026751; ENST00000420251.5; NR_026751.1
Alternative gene names: ENSG00000204623; ZNRD1-AS1; ENSG00000204623.4; OTTHUMG00000031109.3; ENSG00000204623.8; ZNRD1ASP


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 25.2043 non-coding 
CPAT coding probability 16.08% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RNF39-4:3 yes no no no

Available literature

  1. Guo (2015), Expression quantitative trait loci in long non-coding RNA ZNRD1-AS1 influence cervical cancer development., Am J Cancer Res
  2. Wen (2015), Expression quantitative trait loci in long non-coding RNA ZNRD1-AS1 influence both HBV infection and hepatocellular carcinoma development., Mol. Carcinog.
  3. Yang (2015), Expression profile of long non-coding RNAs is altered in endometrial cancer., Int J Clin Exp Med
  4. Yin (2015), Expression Quantitative Trait Loci for CARD8 Contributes to Risk of Two Infection-Related Cancers--Hepatocellular Carcinoma and Cervical Cancer., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RNF39-1:3
3.1 lnc-RNF39-4:3
4.0 lnc-RNF39-4:3
4.1 lnc-RNF39-4:3
5.0 lnc-RNF39-4:3
5.1 lnc-SFTA2-30:12
5.2 lnc-RNF39-4:3