Transcript: lnc-RNF39-4:4

Basic information

LNCipedia transcript ID: lnc-RNF39-4:4 
LNCipedia gene ID: lnc-RNF39-4
Location (hg38): chr6:30054601-30061179
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3294 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000431012; ENST00000431012.1; ZNRD1-AS1-005; OTTHUMT00000253082.1; ENST00000431012.5
Alternative gene names: ENSG00000204623; ZNRD1-AS1; ENSG00000204623.4; OTTHUMG00000031109.3; ENSG00000204623.8


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 95.7782 coding 
CPAT coding probability 82.60% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-RNF39-4:4 yes no no no

Available literature

  1. Guo (2015), Expression quantitative trait loci in long non-coding RNA ZNRD1-AS1 influence cervical cancer development., Am J Cancer Res
  2. Wen (2015), Expression quantitative trait loci in long non-coding RNA ZNRD1-AS1 influence both HBV infection and hepatocellular carcinoma development., Mol. Carcinog.
  3. Yang (2015), Expression profile of long non-coding RNAs is altered in endometrial cancer., Int J Clin Exp Med
  4. Yin (2015), Expression Quantitative Trait Loci for CARD8 Contributes to Risk of Two Infection-Related Cancers--Hepatocellular Carcinoma and Cervical Cancer., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RNF39-1:4
3.1 lnc-RNF39-4:4
4.0 lnc-RNF39-4:4
4.1 lnc-RNF39-4:4
5.0 lnc-RNF39-4:4
5.1 lnc-SFTA2-30:13
5.2 lnc-RNF39-4:4