Transcript: lnc-RNF40-1:1

Basic information

LNCipedia transcript ID: lnc-RNF40-1:1 
LNCipedia gene ID: lnc-RNF40-1
Location (hg38): chr16:30778449-30780152
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1704 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000575562.1; RP11-2C24.6-001; OTTHUMT00000438599.1; NONHSAT141813
Alternative gene names: ENSG00000262026.1; RP11-2C24.6; OTTHUMG00000177700.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -148.7761 non-coding 
CPAT coding probability 11.26% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RNF40-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RNF40-1:1
4.0 lnc-RNF40-1:1
4.1 lnc-RNF40-1:1
5.0 lnc-RNF40-1:1
5.1 lnc-ZNF646-29:1
5.2 lnc-RNF40-1:1