Transcript: lnc-RNFT2-1:1

Basic information

LNCipedia transcript ID: lnc-RNFT2-1:1 
LNCipedia gene ID: lnc-RNFT2-1
Location (hg38): chr12:116710178-116712876
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2055 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Broad Institute; NONCODE v4
Alternative transcript names: ENST00000509590; TCONS_00020237; NONHSAT030962
Alternative gene names: ENSG00000250553; XLOC_009900; linc-RNFT2-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -55.8471 non-coding 
CPAT coding probability 2.92% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RNFT2-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RNFT2-1:1
3.1 lnc-RNFT2-1:1
4.0 lnc-RNFT2-1:1
4.1 lnc-RNFT2-1:1
5.0 lnc-RNFT2-1:1
5.1 lnc-MAP1LC3B2-1:12
5.2 lnc-RNFT2-1:1