Transcript: lnc-RNFT2-1:3

Basic information

LNCipedia transcript ID: lnc-RNFT2-1:3 
LNCipedia gene ID: lnc-RNFT2-1
Ensembl Gene ID: ENSG00000257883
Ensembl Transcript ID: ENST00000546835
Location (hg38): chr12:116661582-116698065
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 876 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000546835; ENST00000546835.1; RP11-497G19.1-001; OTTHUMT00000403837.1; NONHSAT030957
Alternative gene names: ENSG00000257883; RP11-497G19.1; ENSG00000257883.1; OTTHUMG00000169385.1; AC125603.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -107.603 non-coding 
CPAT coding probability 8.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RNFT2-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RNFT2-4:1
3.1 lnc-RNFT2-4:1
4.0 lnc-RNFT2-1:3
4.1 lnc-RNFT2-1:3
5.0 lnc-RNFT2-1:3
5.1 lnc-MAP1LC3B2-1:9
5.2 lnc-RNFT2-1:3