Transcript: lnc-RNPC3-1:1

Basic information

LNCipedia transcript ID: lnc-RNPC3-1:1 
LNCipedia gene ID: lnc-RNPC3-1
Location (hg38): chr1:103414879-103425465
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 418 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: TCONS_00000265; ENST00000414923; ENST00000414923.1; RP11-153F1.2-001; OTTHUMT00000099064.1; NONHSAT004890
Alternative gene names: XLOC_000325; linc-RNPC3-1; ENSG00000230759; RP11-153F1.2; ENSG00000230759.1; OTTHUMG00000041349.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -61.1424 non-coding 
CPAT coding probability 1.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RNPC3-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RNPC3-1:1
3.1 lnc-RNPC3-1:1
4.0 lnc-RNPC3-1:1
4.1 lnc-RNPC3-1:1
5.0 lnc-RNPC3-1:1
5.1 lnc-SLC30A7-52:2
5.2 lnc-RNPC3-1:1