Transcript: lnc-ROBO3-2:1

Basic information

LNCipedia transcript ID: lnc-ROBO3-2:1 
LNCipedia gene ID: lnc-ROBO3-2
Ensembl Gene ID: ENSG00000245498
Ensembl Transcript ID: ENST00000499143
Location (hg38): chr11:124800450-124834487
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2886 bp
Exons: 5
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000499143; ENST00000499143.2; RP11-677M14.7-001; OTTHUMT00000388382.1; ENST00000499143.6
Alternative gene names: ENSG00000245498; RP11-677M14.7; ENSG00000245498.2; OTTHUMG00000166205.1; ENSG00000245498.6; AP000866.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 5.2788 non-coding 
CPAT coding probability 1.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ROBO3-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ROBO3-1:1
3.1 lnc-ROBO3-2:1
4.0 lnc-ROBO3-2:1
4.1 lnc-ROBO3-2:1
5.0 lnc-ROBO3-2:1
5.1 lnc-HINFP-76:5
5.2 lnc-ROBO3-2:1