Transcript: lnc-ROBO3-2:2

Basic information

LNCipedia transcript ID: lnc-ROBO3-2:2 
LNCipedia gene ID: lnc-ROBO3-2
Ensembl Gene ID: ENSG00000245498
Ensembl Transcript ID: ENST00000529392
Location (hg38): chr11:124800910-124806745
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2792 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000529392; ENST00000529392.1; RP11-677M14.7-002; OTTHUMT00000388383.1; NONHSAT024904
Alternative gene names: ENSG00000245498; RP11-677M14.7; ENSG00000245498.2; OTTHUMG00000166205.1; ENSG00000245498.6; AP000866.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 23.4892 non-coding 
CPAT coding probability 0.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ROBO3-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ROBO3-1:2
3.1 lnc-ROBO3-2:2
4.0 lnc-ROBO3-2:2
4.1 lnc-ROBO3-2:2
5.0 lnc-ROBO3-2:2
5.1 lnc-HINFP-76:15
5.2 lnc-ROBO3-2:2