Transcript: lnc-ROCK2-3:5

Basic information

LNCipedia transcript ID: lnc-ROCK2-3:5 
LNCipedia gene ID: lnc-ROCK2-3
RefSeq ID: NR_040080
Location (hg38): chr2:11099851-11132176
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 1635 bp
Exons: 9
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000396164; ENST00000396164.1; AC062028.1-202; NONHSAT069137; NR_040080; NR_040080.1
Alternative gene names: ENSG00000145063; AC062028.1; ENSG00000145063.9; OTTHUMG00000119056.3; ENSG00000145063.10; FLJ33534


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 9.8094 non-coding 
CPAT coding probability 34.45% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ROCK2-3:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ROCK2-3:3
3.1 lnc-ROCK2-3:5
4.0 lnc-ROCK2-3:5
4.1 lnc-ROCK2-3:5
5.0 lnc-ROCK2-3:5
5.1 lnc-RAD51AP2-91:6
5.2 lnc-ROCK2-3:5