Transcript: lnc-ROPN1B-2:1

Basic information

LNCipedia transcript ID: lnc-ROPN1B-2:1 
LNCipedia gene ID: lnc-ROPN1B-2
Ensembl Gene ID: ENSG00000250012
Ensembl Transcript ID: ENST00000511301
Location (hg38): chr3:126084220-126085452
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 327 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000511301.1; RP11-124N2.1-001; OTTHUMT00000369849.1
Alternative gene names: ENSG00000250012.1; RP11-124N2.1; OTTHUMG00000162639.2; AC079848.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -37.8017 non-coding 
CPAT coding probability 0.11% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ROPN1B-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ROPN1B-2:1
4.0 lnc-ROPN1B-2:1
4.1 lnc-ROPN1B-2:1
5.0 lnc-ROPN1B-2:1
5.1 lnc-CFAP100-10:7
5.2 lnc-ROPN1B-2:1