Transcript: lnc-RP9-3:1

Basic information

LNCipedia transcript ID: lnc-RP9-3:1 
LNCipedia gene ID: lnc-RP9-3
Ensembl Gene ID: ENSG00000233219
Ensembl Transcript ID: ENST00000440074
Location (hg38): chr7:33868501-33874231
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 380 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00013154; ENST00000440074; ENST00000440074.1; RP11-89N17.3-001; OTTHUMT00000343605.1; NONHSAT120033
Alternative gene names: XLOC_006405; linc-RP9-3; ENSG00000233219; RP11-89N17.3; ENSG00000233219.1; OTTHUMG00000156243.1; AC008080.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -118.2945 non-coding 
CPAT coding probability 1.84% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RP9-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP9-3:1
3.1 lnc-RP9-3:1
4.0 lnc-RP9-3:1
4.1 lnc-RP9-3:1
5.0 lnc-RP9-3:1
5.1 lnc-LSM5-19:1
5.2 lnc-RP9-3:1