Transcript: lnc-RPA3-2:3

Basic information

LNCipedia transcript ID: lnc-RPA3-2:3 
LNCipedia gene ID: lnc-RPA3-2
Location (hg38): chr7:7738639-7741120
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 781 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016
Alternative transcript names: NONHSAT119133; ENST00000599208.1
Alternative gene names: ENSG00000234718.5; AC007161.5; ENSG00000234718.6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -49.3368 non-coding 
CPAT coding probability 0.94% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RPA3-2:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RPA3-2:3
4.0 lnc-RPA3-2:3
4.1 lnc-RPA3-2:3
5.0 lnc-RPA3-2:3
5.1 lnc-RNF216-37:6
5.2 lnc-RPA3-2:3