Transcript: lnc-RPE-9:3

Basic information

LNCipedia transcript ID: lnc-RPE-9:3 
LNCipedia gene ID: lnc-RPE-9
Ensembl Gene ID: ENSG00000279317
Ensembl Transcript ID: ENST00000412065
Location (hg38): chr2:210171518-210230383
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 506 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000412065.1; AC006994.2-001; OTTHUMT00000336746.1; NONHSAT076671
Alternative gene names: ENSG00000231294.1; AC006994.2; OTTHUMG00000154719.1; ENSG00000279317.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -20.2669 non-coding 
CPAT coding probability 1.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RPE-9:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RPE-2:1
4.0 lnc-RPE-2:1
4.1 lnc-RPE-9:3
5.0 lnc-RPE-9:3
5.1 lnc-CPS1-9:2
5.2 lnc-RPE-9:3