Transcript: lnc-RPGRIP1-1:3

Basic information

LNCipedia transcript ID: lnc-RPGRIP1-1:3 
LNCipedia gene ID: lnc-RPGRIP1-1
Location (hg38): chr14:21384279-21391455
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 481 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000260830.1|FTMT25500013339.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -347.1455 non-coding 
CPAT coding probability 5.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RPGRIP1-1:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-RPGRIP1-1:3
5.0 lnc-RPGRIP1-1:3
5.1 lnc-OR4K15-61:2
5.2 lnc-RPGRIP1-1:3