Transcript: lnc-RPGRIP1-2:1

Basic information

LNCipedia transcript ID: lnc-RPGRIP1-2:1 
LNCipedia gene ID: lnc-RPGRIP1-2
Location (hg38): chr14:21200275-21204355
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3305 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Broad Institute; NONCODE v4
Alternative transcript names: ENST00000499655; TCONS_00022389; NONHSAT035666
Alternative gene names: ENSG00000247386; XLOC_010754; linc-RPGRIP1-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 5.8063 non-coding 
CPAT coding probability 1.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RPGRIP1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RPGRIP1-1:1
3.1 lnc-RPGRIP1-2:1
4.0 lnc-RPGRIP1-2:1
4.1 lnc-RPGRIP1-2:1
5.0 lnc-RPGRIP1-2:1
5.1 lnc-OR4K15-53:1
5.2 lnc-RPGRIP1-2:1